- Single emitter fitting. Reference: C.S. Smith, N. Joseph, B. Rieger, K.A. Lidke, Fast, single-molecule localization that achieves theoretically minimum uncertainty, Nature Methods, accepted, 2010.
- TEM CCD camera characterization add-on. Reference: M. Vulovic, B. Rieger, L.J. van Vliet, A.J. Koster, R.B.G. Ravelli, A Toolkit for the Characterization of CCD cameras for Transmission Electron Microscopy, Acta Crytallographica D., 66:97-109, 2010
- DNA analysis software add-on. Reference: F.G.A. Faas, B. Rieger, L.J. van Vliet, D.I. Cherny, DNA deformations near charged surfaces: electron and atomic force microscopy views, Biophysical Journal 97(4):1148-1157, 2009.
- PointCloudToolbox, for analyzing 3D expresion patterns in fruit fly embryos. Reference: C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, L. Simirenko, G.H. Weber, A.H. DePace, C.N. Henriquez, D.W. Kaszuba, B. Hamann, M.B. Eisen, J. Malik, D. Sudar, M.D. Biggin and D.W. Knowles, 3D morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline, Genome Biology 7:R123, 2006.
- Granulometries. Reference: C.L. Luengo Hendriks, G.M.P. van Kempen and L.J. van Vliet, Improving the accuracy of isotropic granulometries, Pattern Recognition Letters 28(7):865-872, 2007.
- Morphological operations with line structuring elements. Reference: C.L. Luengo Hendriks and L.J. van Vliet, Using line segments as structuring elements for sampling-invariant measurements, IEEE Transactions on Pattern Analysis and Machine Intelligence 27(11):1826-1831, 2005.
- Sampling-free morphological operations in 1D. Reference: C.L. Luengo Hendriks and L.J. van Vliet, Basic morphological operations, band-limited images and sampling, in: L.D. Griffin and M. Lillholm (eds.), Lecture Notes on Computer Science vol. 2695, pp. 313-324, Springer, Berlin, 2003.